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Yes, i have the same problems with tomcat too. Tomcat is not build for hot deployment. In my case with a minimal RAM for the tomcat i can deploy 3 times over an existing application. Than tomcat hangs by 80% system traffic of the server. So i must restart the tomcat. For hot deploy/undeployments there are the application servers better.

For the case of updated jars, it's better to do a clean on the tomcat working directory too.

best Stephan